The Term Enrichment tool finds significant shared GO terms or parents of those GO terms, used to describe the genes in the query/input set to help discover what those genes may have in common. The Term Enrichment tool makes use of the GO-TermFinder perl module written by Gavin Sherlock and Shuai Weng at Stanford University.
More information about this tool can be found in the AmiGO manual.
Caution: Organisms where a proportion of the annotation coverage is provided by electronically inferred (IEA) data will not achieve complete results using the current version of this tool. To get these results, you must upload a gene association file with IEAs included.