rRNA modification

Term information
Term lineage
External references
444 gene product associations

Term Information

Accession

GO:0000154

Ontology

biological process

Synonyms

exact: rRNA editing

alt_id: GO:0016548

Definition

The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically. [source: GOC:curators]

Comment

The term 'RNA editing' (GO:0016547) was merged into 'RNA modification' (GO:0009451) on the basis of statements in the preface of Modification and Editing of RNA (ISBN:1555811337) that there is no clear distinction between modification and editing. Parallel changes were made for substrate (e.g. tRNA, rRNA, etc.) specific child terms of 'RNA editing'.

Subset

Unavailable

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Term Lineage

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all : all [353918 gene products]
- GO:0008150 : biological_process [252790 gene products]
- - GO:0044085 : cellular component biogenesis [11207 gene products]
  - - GO:0022613 : ribonucleoprotein complex biogenesis [3048 gene products]
    - - GO:0042254 : ribosome biogenesis [2648 gene products]
      - GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
  - GO:0009987 : cellular process [140284 gene products]
  - - GO:0044237 : cellular metabolic process [86234 gene products]
    - - GO:0044260 : cellular macromolecule metabolic process [60422 gene products]
      - GO:0016070 : RNA metabolic process [24821 gene products]
        
        GO:0034660 : ncRNA metabolic process [4278 gene products]
        
        GO:0016072 : rRNA metabolic process [1663 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
        
        GO:0009451 : RNA modification [1566 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
        
        GO:0006396 : RNA processing [6135 gene products]
        
        GO:0034470 : ncRNA processing [2984 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
    - GO:0022613 : ribonucleoprotein complex biogenesis [3048 gene products]
    - - GO:0042254 : ribosome biogenesis [2648 gene products]
      - GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
  - GO:0008152 : metabolic process [114209 gene products]
  - - GO:0044237 : cellular metabolic process [86234 gene products]
    - - GO:0044260 : cellular macromolecule metabolic process [60422 gene products]
      - GO:0016070 : RNA metabolic process [24821 gene products]
        
        GO:0034660 : ncRNA metabolic process [4278 gene products]
        
        GO:0016072 : rRNA metabolic process [1663 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
        
        GO:0009451 : RNA modification [1566 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
        
        GO:0006396 : RNA processing [6135 gene products]
        
        GO:0034470 : ncRNA processing [2984 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
    - GO:0043170 : macromolecule metabolic process [68932 gene products]
    - - GO:0044260 : cellular macromolecule metabolic process [60422 gene products]
      - GO:0016070 : RNA metabolic process [24821 gene products]
        
        GO:0034660 : ncRNA metabolic process [4278 gene products]
        
        GO:0016072 : rRNA metabolic process [1663 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
        
        GO:0009451 : RNA modification [1566 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
        
        GO:0006396 : RNA processing [6135 gene products]
        
        GO:0034470 : ncRNA processing [2984 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
      - GO:0010467 : gene expression [38606 gene products]
      - GO:0006396 : RNA processing [6135 gene products]
        
        GO:0034470 : ncRNA processing [2984 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
      - GO:0043412 : macromolecule modification [16913 gene products]
      - GO:0009451 : RNA modification [1566 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
    - GO:0006807 : nitrogen compound metabolic process [53186 gene products]
    - - GO:0006139 : nucleobase, nucleoside, nucleotide and nucleic acid metabolic process [44302 gene products]
      - GO:0016070 : RNA metabolic process [24821 gene products]
        
        GO:0034660 : ncRNA metabolic process [4278 gene products]
        
        GO:0016072 : rRNA metabolic process [1663 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
        
        GO:0009451 : RNA modification [1566 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
        
        GO:0006396 : RNA processing [6135 gene products]
        
        GO:0034470 : ncRNA processing [2984 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
    - GO:0044238 : primary metabolic process [94552 gene products]
    - - GO:0006139 : nucleobase, nucleoside, nucleotide and nucleic acid metabolic process [44302 gene products]
      - GO:0016070 : RNA metabolic process [24821 gene products]
        
        GO:0034660 : ncRNA metabolic process [4278 gene products]
        
        GO:0016072 : rRNA metabolic process [1663 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
        
        GO:0009451 : RNA modification [1566 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]
        
        GO:0006396 : RNA processing [6135 gene products]
        
        GO:0034470 : ncRNA processing [2984 gene products]
        
        GO:0006364 : rRNA processing [1632 gene products]
        
        GO:0000154 : rRNA modification [444 gene products]

External References

HAMAP (1)

MF_00607

InterPro (3)

JCVI_TIGRFAMS (5)

MIPS_funcat (1)

11.06.01

Pfam (1)

PF00398

PROSITE (1)

PS01131

SMART (1)

SM00650

TIGR_role (1)

21040